STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LELG_03137Rab-GAP TBC domain-containing protein. (375 aa)    
Predicted Functional Partners:
LELG_01467
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.941
LELG_00992
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.770
LELG_02168
Vacuolar protein sorting 26.
   
 
 0.719
LELG_03435
GTP-binding protein ryh1.
   
 
 0.603
LELG_00847
Uncharacterized protein.
      
 0.590
LELG_05615
Rab-GAP TBC domain-containing protein.
    
 
 0.499
LELG_05165
Rab-GAP TBC domain-containing protein.
      
 0.479
LELG_04125
Rab-GAP TBC domain-containing protein.
    
 
 0.467
LELG_00593
Sorting nexin GRD19.
    
 
 0.450
LELG_03329
GTP-binding protein YPT32/YPT11.
    
 
 0.433
Your Current Organism:
Lodderomyces elongisporus
NCBI taxonomy Id: 379508
Other names: L. elongisporus NRRL YB-4239, Lodderomyces elongisporus NRRL YB-4239
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