STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LELG_04535Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (886 aa)    
Predicted Functional Partners:
LELG_00627
Uncharacterized protein.
   
 0.999
LELG_01313
Nsp1_C domain-containing protein.
   
 0.999
LELG_01929
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
   
 0.999
SEC13
Protein transport protein SEC13; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport facto [...]
   
 0.999
LELG_02651
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.999
LELG_03686
RanBD1 domain-containing protein.
   
 0.999
LELG_01151
Nuclear pore protein.
   
 0.997
LELG_02963
NUP214 domain-containing protein.
   
 0.996
LELG_05689
Peptidase S59 domain-containing protein.
   
 0.996
LELG_00043
Uncharacterized protein.
   
 0.995
Your Current Organism:
Lodderomyces elongisporus
NCBI taxonomy Id: 379508
Other names: L. elongisporus NRRL YB-4239, Lodderomyces elongisporus NRRL YB-4239
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