MRPL4 protein (Lodderomyces elongisporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MRPL4

54S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family. (296 aa)

Predicted Functional Partners:

LELG_05405

0.996

LELG_01431

0.994

LELG_00326

0.993

LELG_03775

0.992

LELG_03832

0.992

LELG_04489

0.992

LELG_05441

0.992

LELG_01429

0.991

LELG_01574

0.991

LELG_01836

0.991

Your Current Organism:

Lodderomyces elongisporus

NCBI taxonomy Id: 379508
Other names: L. elongisporus NRRL YB-4239, Lodderomyces elongisporus NRRL YB-4239

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LELG_00326	LELG_01429	A5DSJ0	A5DVP3	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	60S ribosomal protein L23, mitochondrial.	0.995
LELG_00326	LELG_01431	A5DSJ0	A5DVP5	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.986
LELG_00326	LELG_01574	A5DSJ0	A5DW38	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.987
LELG_00326	LELG_01836	A5DSJ0	A5DWU9	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.997
LELG_00326	LELG_03775	A5DSJ0	A5E2D8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	MRP-L46 domain-containing protein.	0.990
LELG_00326	LELG_03832	A5DSJ0	A5E2J5	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.994
LELG_00326	LELG_04489	A5DSJ0	A5E4F0	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.993
LELG_00326	LELG_05405	A5DSJ0	A5E716	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.998
LELG_00326	LELG_05441	A5DSJ0	A5E752	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.996
LELG_00326	MRPL4	A5DSJ0	A5E713	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	54S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family.	0.993
LELG_01429	LELG_00326	A5DVP3	A5DSJ0	60S ribosomal protein L23, mitochondrial.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.995
LELG_01429	LELG_01431	A5DVP3	A5DVP5	60S ribosomal protein L23, mitochondrial.	Uncharacterized protein.	0.997
LELG_01429	LELG_01574	A5DVP3	A5DW38	60S ribosomal protein L23, mitochondrial.	Uncharacterized protein.	0.993
LELG_01429	LELG_01836	A5DVP3	A5DWU9	60S ribosomal protein L23, mitochondrial.	Uncharacterized protein.	0.994
LELG_01429	LELG_03775	A5DVP3	A5E2D8	60S ribosomal protein L23, mitochondrial.	MRP-L46 domain-containing protein.	0.994
LELG_01429	LELG_03832	A5DVP3	A5E2J5	60S ribosomal protein L23, mitochondrial.	Uncharacterized protein.	0.998
LELG_01429	LELG_04489	A5DVP3	A5E4F0	60S ribosomal protein L23, mitochondrial.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.996
LELG_01429	LELG_05405	A5DVP3	A5E716	60S ribosomal protein L23, mitochondrial.	Uncharacterized protein.	0.998
LELG_01429	LELG_05441	A5DVP3	A5E752	60S ribosomal protein L23, mitochondrial.	Uncharacterized protein.	0.996
LELG_01429	MRPL4	A5DVP3	A5E713	60S ribosomal protein L23, mitochondrial.	54S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family.	0.991

page 1 of 6

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About