PXR1 protein (Lodderomyces elongisporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PXR1

Protein PXR1; Involved in rRNA-processing at A0, A1 and A2 sites and regulates negatively telomerase; Belongs to the PINX1 family. (345 aa)

Predicted Functional Partners:

LELG_02198

0.972

LELG_00533

0.967

LELG_05129

0.965

LELG_05744

0.959

LELG_02649

0.955

LELG_00289

0.953

LELG_01457

0.953

FAL1

0.952

LELG_04683

0.952

SQS1

0.947

Your Current Organism:

Lodderomyces elongisporus

NCBI taxonomy Id: 379508
Other names: L. elongisporus NRRL YB-4239, Lodderomyces elongisporus NRRL YB-4239

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAL1	LELG_00289	A5DWJ1	A5DSF3	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	MI domain-containing protein.	0.976
FAL1	LELG_00533	A5DWJ1	A5DT47	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	U3 small nucleolar RNA-associated protein 7.	0.411
FAL1	LELG_02198	A5DWJ1	A5DXW1	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	Pre-mRNA splicing factor ATP-dependent RNA helicase PRP43.	0.687
FAL1	LELG_02649	A5DWJ1	A5DZ62	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.436
FAL1	LELG_04683	A5DWJ1	A5E4Z4	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	Uncharacterized protein.	0.975
FAL1	LELG_05129	A5DWJ1	A5E690	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	Protein ENP1.	0.428
FAL1	PXR1	A5DWJ1	A5E4P1	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	Protein PXR1; Involved in rRNA-processing at A0, A1 and A2 sites and regulates negatively telomerase; Belongs to the PINX1 family.	0.952
LELG_00289	FAL1	A5DSF3	A5DWJ1	MI domain-containing protein.	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	0.976
LELG_00289	LELG_00533	A5DSF3	A5DT47	MI domain-containing protein.	U3 small nucleolar RNA-associated protein 7.	0.480
LELG_00289	LELG_02198	A5DSF3	A5DXW1	MI domain-containing protein.	Pre-mRNA splicing factor ATP-dependent RNA helicase PRP43.	0.469
LELG_00289	LELG_04683	A5DSF3	A5E4Z4	MI domain-containing protein.	Uncharacterized protein.	0.965
LELG_00289	LELG_05129	A5DSF3	A5E690	MI domain-containing protein.	Protein ENP1.	0.616
LELG_00289	PXR1	A5DSF3	A5E4P1	MI domain-containing protein.	Protein PXR1; Involved in rRNA-processing at A0, A1 and A2 sites and regulates negatively telomerase; Belongs to the PINX1 family.	0.953
LELG_00289	SQS1	A5DSF3	A5DSB5	MI domain-containing protein.	Protein SQS1; May be involved in splicing; Belongs to the SQS1 family.	0.944
LELG_00533	FAL1	A5DT47	A5DWJ1	U3 small nucleolar RNA-associated protein 7.	ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily.	0.411
LELG_00533	LELG_00289	A5DT47	A5DSF3	U3 small nucleolar RNA-associated protein 7.	MI domain-containing protein.	0.480
LELG_00533	LELG_01457	A5DT47	A5DVS1	U3 small nucleolar RNA-associated protein 7.	Uncharacterized protein.	0.450
LELG_00533	LELG_02198	A5DT47	A5DXW1	U3 small nucleolar RNA-associated protein 7.	Pre-mRNA splicing factor ATP-dependent RNA helicase PRP43.	0.788
LELG_00533	LELG_02649	A5DT47	A5DZ62	U3 small nucleolar RNA-associated protein 7.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.927
LELG_00533	LELG_04683	A5DT47	A5E4Z4	U3 small nucleolar RNA-associated protein 7.	Uncharacterized protein.	0.871

page 1 of 5

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About