STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRP5Pre-mRNA-processing ATP-dependent RNA helicase PRP5; ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA (By similarity); Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily. (994 aa)    
Predicted Functional Partners:
LELG_01918
Pre-mRNA splicing factor ini1.
    
 0.996
LELG_03768
C2H2-type domain-containing protein.
   
 0.996
LELG_04556
Uncharacterized protein.
   
 0.996
LELG_04570
Uncharacterized protein.
   
 0.996
LELG_00553
U1-type domain-containing protein.
    
 0.995
LELG_00355
Uncharacterized protein.
    
 0.994
LELG_02202
CPSF_A domain-containing protein.
   
 0.994
LELG_05653
Uncharacterized protein.
    
 0.994
LELG_05254
Sm domain-containing protein.
   
 0.993
LELG_02198
Pre-mRNA splicing factor ATP-dependent RNA helicase PRP43.
   
 0.984
Your Current Organism:
Lodderomyces elongisporus
NCBI taxonomy Id: 379508
Other names: L. elongisporus NRRL YB-4239, Lodderomyces elongisporus NRRL YB-4239
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