STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE3DUbiquitin protein ligase E3D. (389 aa)    
Predicted Functional Partners:
RBBP6
RB binding protein 6, ubiquitin ligase.
    
 0.995
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 
 0.939
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.697
DCLRE1A
DRMBL domain-containing protein.
    
 
 0.567
INTS11
Integrator complex subunit 11.
    
 
 0.567
DCLRE1C
DNA cross-link repair 1C.
    
 
 0.567
DCLRE1B
DNA cross-link repair 1B.
    
 
 0.567
INTS9
Integrator complex subunit 9.
    
 
 0.567
ENSPCOP00000004268
Uncharacterized protein.
    
 
 0.537
ENSPCOP00000027188
Uncharacterized protein.
    
 
 0.537
Your Current Organism:
Propithecus coquereli
NCBI taxonomy Id: 379532
Other names: P. coquereli, Propithecus verreauxi coquereli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.