STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM31_19010Unannotated protein; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
GM31_19005
Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
 
  
 0.807
GM31_01885
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.733
GCA_001297775_02227
Unannotated protein.
  
     0.695
GCA_001297775_02862
Unannotated protein.
  
     0.693
GM31_17335
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.693
GM31_10565
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.663
GCA_001297775_00625
Unannotated protein.
  
     0.657
GM31_13185
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.642
GM31_04760
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.622
GM31_06975
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.620
Your Current Organism:
Trabulsiella odontotermitis
NCBI taxonomy Id: 379893
Other names: BCRC 17577, Enterobacteriaceae bacterium Eant 3-3, Enterobacteriaceae bacterium Eant 3-9, LMG 23580, LMG:23580, T. odontotermitis, Trabulsiella odontotermitis Chou et al. 2007, strain Eant 3-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.