E0Z10_g7106 protein (Xylaria hypoxylon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

E0Z10_g7106

Fungal_trans domain-containing protein. (852 aa)

Predicted Functional Partners:

E0Z10_g7107

0.691

NOP7

0.661

E0Z10_g7610

0.620

E0Z10_g3875

0.605

E0Z10_g6194

0.599

E0Z10_g8274

0.578

ERB1

0.563

E0Z10_g10445

0.553

E0Z10_g9655

0.530

E0Z10_g1750

0.522

Your Current Organism:

Xylaria hypoxylon

NCBI taxonomy Id: 37992
Other names: X. hypoxylon

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E0Z10_g10445	E0Z10_g7106	A0A4Z0YHV2	A0A4Z0YR78	PUM-HD domain-containing protein.	Fungal_trans domain-containing protein.	0.553
E0Z10_g10445	NOP7	A0A4Z0YHV2	A0A4Z0YR02	PUM-HD domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.862
E0Z10_g1750	E0Z10_g3875	A0A4Z0Z5V7	A0A4Z0Z689	Ribosomal_L18_c domain-containing protein.	Ipi1_N domain-containing protein.	0.954
E0Z10_g1750	E0Z10_g7106	A0A4Z0Z5V7	A0A4Z0YR78	Ribosomal_L18_c domain-containing protein.	Fungal_trans domain-containing protein.	0.522
E0Z10_g1750	E0Z10_g7610	A0A4Z0Z5V7	A0A4Z0YB62	Ribosomal_L18_c domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.959
E0Z10_g1750	E0Z10_g8274	A0A4Z0Z5V7	A0A4Z0YK68	Ribosomal_L18_c domain-containing protein.	CP-type G domain-containing protein.	0.970
E0Z10_g1750	E0Z10_g9655	A0A4Z0Z5V7	A0A4Z0Y4V8	Ribosomal_L18_c domain-containing protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.977
E0Z10_g1750	ERB1	A0A4Z0Z5V7	A0A4Z0YVS8	Ribosomal_L18_c domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.974
E0Z10_g1750	NOP7	A0A4Z0Z5V7	A0A4Z0YR02	Ribosomal_L18_c domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.979
E0Z10_g3875	E0Z10_g1750	A0A4Z0Z689	A0A4Z0Z5V7	Ipi1_N domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.954
E0Z10_g3875	E0Z10_g7106	A0A4Z0Z689	A0A4Z0YR78	Ipi1_N domain-containing protein.	Fungal_trans domain-containing protein.	0.605
E0Z10_g3875	E0Z10_g7610	A0A4Z0Z689	A0A4Z0YB62	Ipi1_N domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
E0Z10_g3875	E0Z10_g8274	A0A4Z0Z689	A0A4Z0YK68	Ipi1_N domain-containing protein.	CP-type G domain-containing protein.	0.984
E0Z10_g3875	E0Z10_g9655	A0A4Z0Z689	A0A4Z0Y4V8	Ipi1_N domain-containing protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.991
E0Z10_g3875	ERB1	A0A4Z0Z689	A0A4Z0YVS8	Ipi1_N domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.872
E0Z10_g3875	NOP7	A0A4Z0Z689	A0A4Z0YR02	Ipi1_N domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
E0Z10_g6194	E0Z10_g7106	A0A4Z0YRD9	A0A4Z0YR78	Uncharacterized protein.	Fungal_trans domain-containing protein.	0.599
E0Z10_g7106	E0Z10_g10445	A0A4Z0YR78	A0A4Z0YHV2	Fungal_trans domain-containing protein.	PUM-HD domain-containing protein.	0.553
E0Z10_g7106	E0Z10_g1750	A0A4Z0YR78	A0A4Z0Z5V7	Fungal_trans domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.522
E0Z10_g7106	E0Z10_g3875	A0A4Z0YR78	A0A4Z0Z689	Fungal_trans domain-containing protein.	Ipi1_N domain-containing protein.	0.605