Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDK68647.1 | SDK78277.1 | SAMN05216298_1170 | SAMN05216298_1331 | Exonuclease SbcC. | 5'-3' exonuclease, C-terminal SAM fold. | 0.921 |
| SDK68647.1 | SDL33990.1 | SAMN05216298_1170 | SAMN05216298_3499 | Exonuclease SbcC. | Calcineurin-like phosphoesterase. | 0.997 |
| SDK68647.1 | SDL60759.1 | SAMN05216298_1170 | SAMN05216298_4483 | Exonuclease SbcC. | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | 0.480 |
| SDK68647.1 | SDL60774.1 | SAMN05216298_1170 | SAMN05216298_4484 | Exonuclease SbcC. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.480 |
| SDK68647.1 | SDL67834.1 | SAMN05216298_1170 | SAMN05216298_4766 | Exonuclease SbcC. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.775 |
| SDK68647.1 | SDL79672.1 | SAMN05216298_1170 | SAMN05216298_0063 | Exonuclease SbcC. | ATP-dependent DNA helicase, Rep family. | 0.991 |
| SDK68647.1 | polA | SAMN05216298_1170 | SAMN05216298_0394 | Exonuclease SbcC. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.953 |
| SDK68647.1 | recA | SAMN05216298_1170 | SAMN05216298_5141 | Exonuclease SbcC. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.908 |
| SDK68647.1 | sbcD | SAMN05216298_1170 | SAMN05216298_1169 | Exonuclease SbcC. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.999 |
| SDK68647.1 | topA | SAMN05216298_1170 | SAMN05216298_2356 | Exonuclease SbcC. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.945 |
| SDK78277.1 | SDK68647.1 | SAMN05216298_1331 | SAMN05216298_1170 | 5'-3' exonuclease, C-terminal SAM fold. | Exonuclease SbcC. | 0.921 |
| SDK78277.1 | SDL33990.1 | SAMN05216298_1331 | SAMN05216298_3499 | 5'-3' exonuclease, C-terminal SAM fold. | Calcineurin-like phosphoesterase. | 0.982 |
| SDK78277.1 | SDL60759.1 | SAMN05216298_1331 | SAMN05216298_4483 | 5'-3' exonuclease, C-terminal SAM fold. | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | 0.518 |
| SDK78277.1 | SDL60774.1 | SAMN05216298_1331 | SAMN05216298_4484 | 5'-3' exonuclease, C-terminal SAM fold. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.588 |
| SDK78277.1 | SDL67834.1 | SAMN05216298_1331 | SAMN05216298_4766 | 5'-3' exonuclease, C-terminal SAM fold. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.995 |
| SDK78277.1 | SDL79672.1 | SAMN05216298_1331 | SAMN05216298_0063 | 5'-3' exonuclease, C-terminal SAM fold. | ATP-dependent DNA helicase, Rep family. | 0.997 |
| SDK78277.1 | polA | SAMN05216298_1331 | SAMN05216298_0394 | 5'-3' exonuclease, C-terminal SAM fold. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.835 |
| SDK78277.1 | recA | SAMN05216298_1331 | SAMN05216298_5141 | 5'-3' exonuclease, C-terminal SAM fold. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.963 |
| SDK78277.1 | sbcD | SAMN05216298_1331 | SAMN05216298_1169 | 5'-3' exonuclease, C-terminal SAM fold. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.982 |
| SDK78277.1 | topA | SAMN05216298_1331 | SAMN05216298_2356 | 5'-3' exonuclease, C-terminal SAM fold. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.886 |
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