STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL82278.1Histidine kinase-like ATPase domain-containing protein. (133 aa)    
Predicted Functional Partners:
SDL09110.1
Signal transduction histidine kinase.
 
 0.995
SDL10631.1
Pyruvate dehydrogenase E1 component beta subunit.
    
  0.815
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
  0.808
SDL58562.1
2-oxoglutarate dehydrogenase E1 component.
   
 0.808
SDL38471.1
Diguanylate cyclase/phosphodiesterase.
  
 
 0.798
SDL47773.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.787
SDK68323.1
2-oxoglutarate dehydrogenase E2 component.
    
  0.776
SDL10616.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
  0.776
SDK57630.1
Hypothetical protein.
  
     0.681
SDK68309.1
Dihydrolipoamide dehydrogenase.
    
  0.671
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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