STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK59659.1Putative transposase. (332 aa)    
Predicted Functional Partners:
SDL04171.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
 0.631
SDK83415.1
FMN reductase.
  
  0.574
SDK83233.1
FMN reductase.
  
  0.558
SDK83396.1
Sulfonate transport system substrate-binding protein.
  
 
  0.531
SDK59634.1
Short chain dehydrogenase.
       0.507
SDL54038.1
NitT/TauT family transport system substrate-binding protein.
  
 
  0.500
SDK83385.1
Sulfonate transport system permease protein.
  
 
  0.497
SDK59679.1
Hypothetical protein.
       0.472
SDL54024.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
   
 
  0.457
SDK83314.1
NitT/TauT family transport system permease protein.
   
 
  0.431
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.