STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK64741.1GntR family transcriptional regulator. (241 aa)    
Predicted Functional Partners:
SDK64725.1
ADP-ribosylglycohydrolase.
 
     0.936
SDK64683.1
Sugar or nucleoside kinase, ribokinase family.
 
  
 0.927
SDK64707.1
Purine-cytosine permease; Belongs to the purine-cytosine permease (2.A.39) family.
 
    0.904
SDK83147.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.874
SDL74272.1
Transcriptional regulator, AraC family.
 
  
 0.732
SDK59055.1
AraC-type DNA-binding protein.
 
  
 0.723
SDL06662.1
Transcriptional attenuator, LytR family.
   
    0.663
SDL36961.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.660
SDL03648.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
    
  0.648
SDK61184.1
Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase.
    
  0.639
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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