STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK69720.1Transcriptional regulator, HxlR family. (224 aa)    
Predicted Functional Partners:
SDK87475.1
NAD-dependent deacetylase.
  
    0.782
SDK83147.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.778
SDL06662.1
Transcriptional attenuator, LytR family.
   
    0.778
SDK53664.1
DNA-binding transcriptional regulator YhcF, GntR family.
   
    0.777
SDL25118.1
Transcriptional regulator, ArsR family.
   
    0.777
SDL19528.1
DNA-binding transcriptional activator of the SARP family.
   
    0.769
SDL78783.1
Transcriptional regulator, AraC family with amidase-like domain.
   
    0.738
SDK82972.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
   
    0.738
SDL45736.1
Transcriptional regulator, AraC family with amidase-like domain.
   
    0.738
SDL44940.1
Transcriptional regulator, HxlR family.
  
     0.646
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.