STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK70584.1Lipooligosaccharide transport system permease protein. (265 aa)    
Predicted Functional Partners:
SDL03245.1
ABC-2 type transport system ATP-binding protein.
  
 0.989
SDK70606.1
Lipooligosaccharide transport system permease protein.
 
  
 
0.982
SDK70627.1
Lipooligosaccharide transport system ATP-binding protein.
 
  
  0.970
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      0.543
SDK70559.1
Peptidase family M23.
       0.506
SDL58399.1
ABC-2 type transport system ATP-binding protein.
  
  
  0.480
SDK70651.1
Fatty acid desaturase.
  
    0.474
SDL34772.1
Peptide/nickel transport system substrate-binding protein.
  
  
  0.454
SDK70532.1
Hypothetical protein.
       0.450
SDL03372.1
ABC-2 type transport system ATP-binding protein.
  
  
  0.449
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.