STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK77972.1Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family. (367 aa)    
Predicted Functional Partners:
SDK77997.1
tRNA (adenine-58-N(1)-) methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
      0.830
SDK80272.1
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
    0.801
SDL05447.1
MFS transporter, NNP family, nitrate/nitrite transporter.
  
    0.779
SDK64913.1
CBS domain-containing protein.
   
    0.777
SDK77963.1
Methyltransferase domain-containing protein.
       0.584
SDK77938.1
Putative RecB family exonuclease.
       0.566
arc
Proteasome-associated ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.
 
     0.450
SDL79496.1
Site-specific DNA recombinase; Manually curated.
  
 
   0.447
SDL65881.1
Site-specific DNA recombinase; Manually curated.
  
 
   0.445
SDL00563.1
Site-specific DNA recombinase.
  
 
   0.444
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.