STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK84055.1Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family. (326 aa)    
Predicted Functional Partners:
SDL45814.1
Alpha-L-arabinofuranosidase B (ABFB) domain-containing protein.
 
     0.955
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.883
SDK83086.1
alpha-N-arabinofuranosidase.
 
  
 0.798
SDK84027.1
Uncharacterized protein, YigZ family.
       0.757
SDK94356.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
     0.738
SDK68217.1
Glucuronate isomerase.
     
 0.697
SDK85920.1
alpha-N-arabinofuranosidase.
 
  
 0.695
SDK94680.1
Xylan 1,4-beta-xylosidase.
    
  0.649
SDL31370.1
Arabinan endo-1,5-alpha-L-arabinosidase.
  
     0.646
SDL18403.1
Beta-L-arabinofuranosidase, GH127.
 
     0.636
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.