STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK85866.1L-rhamnose isomerase / sugar isomerase. (389 aa)    
Predicted Functional Partners:
SDK85825.1
Rhamnulokinase.
 
  
 0.988
SDK85843.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
  0.985
SDK85886.1
L-rhamnose mutarotase.
 
  
 0.981
SDL73049.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
     0.698
SDK85905.1
Transcriptional regulator, LacI family.
 
     0.685
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
  
  
 0.596
SDK85809.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
       0.502
SDK59524.1
alpha-L-rhamnosidase.
 
     0.472
xylB
Xylulokinase.
    
 0.447
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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