STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK86683.1Phosphoglycerate dehydrogenase. (329 aa)    
Predicted Functional Partners:
SDL81120.1
Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
 
 0.939
SDL36961.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.735
SDK86698.1
Transcriptional regulator, LacI family.
       0.705
SDL18930.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
    
  0.660
SDK60212.1
Malate synthase.
     
 0.656
SDK80504.1
2-keto-3-deoxy-phosphogluconate aldolase.
    
  0.653
SDK60234.1
Isocitrate lyase.
   
 
  0.648
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.647
SDL21683.1
Glycolate oxidase.
   
 
  0.600
SDL68636.1
Glycolate oxidase.
   
 
  0.600
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.