STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK88755.1Two component transcriptional regulator, LuxR family. (206 aa)    
Predicted Functional Partners:
SDK88765.1
Signal transduction histidine kinase.
   0.956
SDL09110.1
Signal transduction histidine kinase.
   
 0.905
SDK58124.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.840
SDL73151.1
Signal transduction histidine kinase.
 
   0.796
SDK55233.1
Signal transduction histidine kinase.
 
   0.781
SDK61452.1
Signal transduction histidine kinase.
  
   0.741
SDK77921.1
Signal transduction histidine kinase.
 
   0.719
SDK89215.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.694
SDK63426.1
Signal transduction histidine kinase.
 
   0.682
SDL81842.1
Signal transduction histidine kinase.
  
   0.666
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.