STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK89752.1SPFH domain / Band 7 family protein. (333 aa)    
Predicted Functional Partners:
ftsH
Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.994
SDK89736.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.958
SDL73677.1
Leucine-rich repeat (LRR) protein.
   
 0.888
SDL81591.1
Membrane associated serine protease, rhomboid family.
   
 0.864
SDK84653.1
Membrane associated serine protease, rhomboid family.
   
 0.864
SDK89772.1
8-oxo-dGTP diphosphatase.
 
     0.828
SDL79580.1
Predicted Zn-dependent peptidase.
   
 0.804
SDL79598.1
Predicted Zn-dependent peptidase.
   
 0.804
SDK69371.1
Predicted Zn-dependent peptidase; Belongs to the peptidase M16 family.
   
 0.804
SDL15457.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  0.781
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.