STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK89864.1Transcriptional regulator, LacI family. (346 aa)    
Predicted Functional Partners:
SDK57066.1
Glutamate synthase (NADH) large subunit.
    
 
 0.843
SDK89937.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
   
   0.670
SDK89882.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
       0.636
SDK89899.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.636
SDK89916.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.636
SDK89840.1
Hypothetical protein.
       0.520
SDL04212.1
Phosphocarrier protein HPr.
    
   0.457
SDK89828.1
Hypothetical protein.
   
   0.441
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.431
SDL03424.1
IMP dehydrogenase.
    
   0.414
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.