SDK90943.1 protein (Glycomyces sambucus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDK90943.1

HTH domain-containing protein. (373 aa)

Predicted Functional Partners:

SDK60664.1

0.760

SDK56170.1

0.730

SDL17178.1

0.677

SDK90926.1

0.569

rbpA

0.454

rpoZ

0.447

rpoA

0.447

rpoC

0.447

rpoB

0.447

SDK78175.1

0.424

Your Current Organism:

Glycomyces sambucus

NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDK56170.1	SDK90943.1	SAMN05216298_0553	SAMN05216298_1978	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	HTH domain-containing protein.	0.730
SDK56170.1	rbpA	SAMN05216298_0553	SAMN05216298_1339	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.454
SDK56170.1	rpoA	SAMN05216298_0553	SAMN05216298_4166	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447
SDK56170.1	rpoB	SAMN05216298_0553	SAMN05216298_4471	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447
SDK56170.1	rpoC	SAMN05216298_0553	SAMN05216298_4470	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447
SDK56170.1	rpoZ	SAMN05216298_0553	SAMN05216298_3232	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.447
SDK60664.1	SDK90943.1	SAMN05216298_0760	SAMN05216298_1978	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	HTH domain-containing protein.	0.760
SDK60664.1	rbpA	SAMN05216298_0760	SAMN05216298_1339	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.454
SDK60664.1	rpoA	SAMN05216298_0760	SAMN05216298_4166	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447
SDK60664.1	rpoB	SAMN05216298_0760	SAMN05216298_4471	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447
SDK60664.1	rpoC	SAMN05216298_0760	SAMN05216298_4470	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447
SDK60664.1	rpoZ	SAMN05216298_0760	SAMN05216298_3232	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.447
SDK78175.1	SDK90943.1	SAMN05216298_1324	SAMN05216298_1978	Proteasome accessory factor B.	HTH domain-containing protein.	0.424
SDK78175.1	rbpA	SAMN05216298_1324	SAMN05216298_1339	Proteasome accessory factor B.	RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.947
SDK78175.1	rpoA	SAMN05216298_1324	SAMN05216298_4166	Proteasome accessory factor B.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.916
SDK78175.1	rpoB	SAMN05216298_1324	SAMN05216298_4471	Proteasome accessory factor B.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.916
SDK78175.1	rpoC	SAMN05216298_1324	SAMN05216298_4470	Proteasome accessory factor B.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.916
SDK78175.1	rpoZ	SAMN05216298_1324	SAMN05216298_3232	Proteasome accessory factor B.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.953
SDK90926.1	SDK90943.1	SAMN05216298_1977	SAMN05216298_1978	Excinuclease UvrABC ATPase subunit.	HTH domain-containing protein.	0.569
SDK90926.1	rpoB	SAMN05216298_1977	SAMN05216298_4471	Excinuclease UvrABC ATPase subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.400