SDK91568.1 protein (Glycomyces sambucus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDK91568.1

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (203 aa)

Predicted Functional Partners:

SDL09110.1

0.905

SDL49392.1

0.729

SDK91584.1

0.723

SDK58124.1

0.688

SDK80647.1

0.602

SDK84001.1

0.593

SDL37176.1

0.562

SDK89215.1

0.553

SDK77921.1

0.527

SDK66158.1

0.517

Your Current Organism:

Glycomyces sambucus

NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDK58124.1	SDK80647.1	SAMN05216298_0643	SAMN05216298_1445	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Two component transcriptional regulator, LuxR family.	0.754
SDK58124.1	SDK84001.1	SAMN05216298_0643	SAMN05216298_1608	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Two component transcriptional regulator, LuxR family.	0.790
SDK58124.1	SDK89215.1	SAMN05216298_0643	SAMN05216298_1881	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.435
SDK58124.1	SDK91568.1	SAMN05216298_0643	SAMN05216298_2014	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.688
SDK58124.1	SDL09110.1	SAMN05216298_0643	SAMN05216298_2682	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.983
SDK58124.1	SDL37176.1	SAMN05216298_0643	SAMN05216298_3659	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.823
SDK58124.1	SDL49392.1	SAMN05216298_0643	SAMN05216298_4075	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.720
SDK66158.1	SDK80647.1	SAMN05216298_1041	SAMN05216298_1445	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Two component transcriptional regulator, LuxR family.	0.543
SDK66158.1	SDK84001.1	SAMN05216298_1041	SAMN05216298_1608	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Two component transcriptional regulator, LuxR family.	0.650
SDK66158.1	SDK91568.1	SAMN05216298_1041	SAMN05216298_2014	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.517
SDK66158.1	SDL09110.1	SAMN05216298_1041	SAMN05216298_2682	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Signal transduction histidine kinase.	0.814
SDK66158.1	SDL49392.1	SAMN05216298_1041	SAMN05216298_4075	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.574
SDK77921.1	SDK80647.1	SAMN05216298_1310	SAMN05216298_1445	Signal transduction histidine kinase.	Two component transcriptional regulator, LuxR family.	0.786
SDK77921.1	SDK84001.1	SAMN05216298_1310	SAMN05216298_1608	Signal transduction histidine kinase.	Two component transcriptional regulator, LuxR family.	0.793
SDK77921.1	SDK91568.1	SAMN05216298_1310	SAMN05216298_2014	Signal transduction histidine kinase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.527
SDK77921.1	SDL09110.1	SAMN05216298_1310	SAMN05216298_2682	Signal transduction histidine kinase.	Signal transduction histidine kinase.	0.814
SDK77921.1	SDL49392.1	SAMN05216298_1310	SAMN05216298_4075	Signal transduction histidine kinase.	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.	0.509
SDK80647.1	SDK58124.1	SAMN05216298_1445	SAMN05216298_0643	Two component transcriptional regulator, LuxR family.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.754
SDK80647.1	SDK66158.1	SAMN05216298_1445	SAMN05216298_1041	Two component transcriptional regulator, LuxR family.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.543
SDK80647.1	SDK77921.1	SAMN05216298_1445	SAMN05216298_1310	Two component transcriptional regulator, LuxR family.	Signal transduction histidine kinase.	0.786