STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL01369.1DNA binding domain-containing protein, excisionase family. (152 aa)    
Predicted Functional Partners:
SDL01389.1
Predicted nucleic acid-binding protein, contains PIN domain.
 
  
 0.970
SDK57066.1
Glutamate synthase (NADH) large subunit.
    
  0.829
SDL36961.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.812
SDL01296.1
MoxR-like ATPase.
  
    0.509
SDL01284.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
       0.505
SDL01323.1
Hypothetical protein.
       0.505
SDL01351.1
Protein of unknown function.
       0.505
SDL01253.1
NADH dehydrogenase.
       0.452
SDL01271.1
Hypothetical protein.
       0.452
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.