STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL03476.1ABC-2 type transport system ATP-binding protein. (243 aa)    
Predicted Functional Partners:
SDL03494.1
ABC-2 family transporter protein.
 
     0.853
SDK80686.1
ABC-2 family transporter protein.
  
     0.731
SDK86973.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
     0.696
SDL03459.1
Signal transduction histidine kinase.
  
    0.547
SDL03441.1
Two component transcriptional regulator, LuxR family.
       0.541
SDK64082.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
   
  0.540
SDK84764.1
ABC-2 family transporter protein.
   
  0.540
SDL36075.1
ABC-2 type transport system permease protein.
  
     0.534
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.449
atpA
ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.448
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.