STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL04856.1Hypothetical protein. (111 aa)    
Predicted Functional Partners:
SDL04843.1
Hypothetical protein.
       0.661
SDL04875.1
Bacteriophage replication gene A protein (GPA).
       0.543
SDL04890.1
DNA binding domain-containing protein, excisionase family.
       0.543
SDL04914.1
Site-specific recombinase XerD; Manually curated; Belongs to the 'phage' integrase family.
       0.543
SDL04735.1
Hypothetical protein.
       0.468
SDL04759.1
Hypothetical protein.
       0.468
SDL04776.1
Hypothetical protein.
       0.468
SDL04802.1
Protein of unknown function.
       0.468
SDL04813.1
Hypothetical protein.
       0.468
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.