STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL05115.1Heat shock protein beta. (211 aa)    
Predicted Functional Partners:
SDK58444.1
Hypothetical protein.
   
 0.872
SDL35700.1
Serine protease, subtilisin family; Belongs to the peptidase S8 family.
  
  0.712
SDL74380.1
Hypothetical protein.
     
 0.661
SDK83052.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
    
  0.630
SDK88865.1
Endoglucanase.
    
  0.630
SDL73520.1
Cellulose binding domain-containing protein.
    
  0.630
SDL16950.1
Lysophospholipase L1.
    
  0.564
SDL05131.1
Hypothetical protein.
       0.523
SDL39675.1
Hypothetical protein.
    
   0.481
SDL73429.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
 
   0.462
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.