STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL06228.1Inner membrane component of T3SS domain-containing protein. (237 aa)    
Predicted Functional Partners:
SDL58562.1
2-oxoglutarate dehydrogenase E1 component.
    
 
 0.999
SDL06052.1
Serine/threonine protein kinase.
 
 
 
 0.986
SDK66759.1
Serine/threonine protein kinase.
 
 
 
 0.983
SDL68355.1
Putative peptidoglycan lipid II flippase.
  
 
 
 0.983
SDL06213.1
FHA domain-containing protein.
   
 0.978
SDL79884.1
Serine/threonine protein kinase.
 
 
 
 0.974
SDK51567.1
Putative peptidoglycan lipid II flippase.
  
 
 
 0.974
SDK61065.1
Serine/threonine protein kinase.
 
 
 
 0.972
SDL06190.1
Protein phosphatase.
 
  
 0.881
SDK57066.1
Glutamate synthase (NADH) large subunit.
    
   0.841
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.