SDL10247.1 protein (Glycomyces sambucus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDL10247.1

Alpha-glucosidase. (534 aa)

Predicted Functional Partners:

SDL10225.1

0.812

SDL10189.1

0.808

SDL03057.1

0.799

SDL16984.1

0.799

SDL47840.1

0.799

SDL48255.1

0.799

SDL66859.1

0.799

SDL73886.1

0.799

SDL10204.1

0.782

SDK67111.1

0.747

Your Current Organism:

Glycomyces sambucus

NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDK67111.1	SDL10247.1	SAMN05216298_1083	SAMN05216298_2745	Trehalose 6-phosphatase.	Alpha-glucosidase.	0.747
SDL03057.1	SDL10247.1	SAMN05216298_2364	SAMN05216298_2745	Amino acid/polyamine/organocation transporter, APC superfamily.	Alpha-glucosidase.	0.799
SDL10189.1	SDL10204.1	SAMN05216298_2742	SAMN05216298_2743	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.988
SDL10189.1	SDL10225.1	SAMN05216298_2742	SAMN05216298_2744	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	Oxidoreductase family, C-terminal alpha/beta domain.	0.773
SDL10189.1	SDL10247.1	SAMN05216298_2742	SAMN05216298_2745	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	Alpha-glucosidase.	0.808
SDL10204.1	SDL10189.1	SAMN05216298_2743	SAMN05216298_2742	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.988
SDL10204.1	SDL10225.1	SAMN05216298_2743	SAMN05216298_2744	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Oxidoreductase family, C-terminal alpha/beta domain.	0.773
SDL10204.1	SDL10247.1	SAMN05216298_2743	SAMN05216298_2745	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	Alpha-glucosidase.	0.782
SDL10225.1	SDL10189.1	SAMN05216298_2744	SAMN05216298_2742	Oxidoreductase family, C-terminal alpha/beta domain.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.773
SDL10225.1	SDL10204.1	SAMN05216298_2744	SAMN05216298_2743	Oxidoreductase family, C-terminal alpha/beta domain.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.773
SDL10225.1	SDL10247.1	SAMN05216298_2744	SAMN05216298_2745	Oxidoreductase family, C-terminal alpha/beta domain.	Alpha-glucosidase.	0.812
SDL10247.1	SDK67111.1	SAMN05216298_2745	SAMN05216298_1083	Alpha-glucosidase.	Trehalose 6-phosphatase.	0.747
SDL10247.1	SDL03057.1	SAMN05216298_2745	SAMN05216298_2364	Alpha-glucosidase.	Amino acid/polyamine/organocation transporter, APC superfamily.	0.799
SDL10247.1	SDL10189.1	SAMN05216298_2745	SAMN05216298_2742	Alpha-glucosidase.	Carbohydrate ABC transporter membrane protein 1, CUT1 family.	0.808
SDL10247.1	SDL10204.1	SAMN05216298_2745	SAMN05216298_2743	Alpha-glucosidase.	Carbohydrate ABC transporter membrane protein 2, CUT1 family.	0.782
SDL10247.1	SDL10225.1	SAMN05216298_2745	SAMN05216298_2744	Alpha-glucosidase.	Oxidoreductase family, C-terminal alpha/beta domain.	0.812
SDL10247.1	SDL16984.1	SAMN05216298_2745	SAMN05216298_2861	Alpha-glucosidase.	Amino acid transporter.	0.799
SDL10247.1	SDL47840.1	SAMN05216298_2745	SAMN05216298_4002	Alpha-glucosidase.	Signal peptidase I.	0.799
SDL10247.1	SDL48255.1	SAMN05216298_2745	SAMN05216298_4021	Alpha-glucosidase.	Amino acid/polyamine/organocation transporter, APC superfamily.	0.799
SDL10247.1	SDL66859.1	SAMN05216298_2745	SAMN05216298_4718	Alpha-glucosidase.	Arginine:ornithine antiporter, APA family.	0.799