STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL16695.1Uncharacterized conserved protein YbbC, DUF1343 family. (416 aa)    
Predicted Functional Partners:
SDL16682.1
beta-N-acetylhexosaminidase.
    0.977
SDL59967.1
beta-N-acetylhexosaminidase; Belongs to the glycosyl hydrolase 3 family.
    0.883
SDL66406.1
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
      0.749
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
    0.642
SDL16660.1
Muramoyltetrapeptide carboxypeptidase.
 
     0.628
SDL16604.1
D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55.
 
     0.572
SDL59853.1
BadF-type ATPase.
 
    0.521
SDL16639.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
       0.484
SDL16505.1
Peptide/nickel transport system substrate-binding protein.
       0.481
SDL16528.1
Peptide/nickel transport system permease protein.
       0.481
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.