STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL18363.1Glycine/D-amino acid oxidase. (632 aa)    
Predicted Functional Partners:
SDL18327.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component.
 
 0.998
SDL18345.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
  0.980
SDL18303.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
  
  0.967
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.944
SDL18281.1
Proline racemase; Belongs to the proline racemase family.
 
  
 0.935
SDL16111.1
Thioredoxin reductase.
 
  
  0.923
SDL16101.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
 
  0.910
SDK57066.1
Glutamate synthase (NADH) large subunit.
  
 
 0.887
SDL18261.1
NADP-dependent aldehyde dehydrogenase.
 
 
  0.804
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.752
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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