STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL19815.1CubicO group peptidase, beta-lactamase class C family. (452 aa)    
Predicted Functional Partners:
SDL19793.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
       0.773
SDL19756.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.651
SDL19776.1
Anti-sigma-K factor RskA.
       0.651
SDL19825.1
Hypothetical protein.
       0.511
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
       0.435
SDL19611.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
       0.435
SDL19627.1
Phytoene/squalene synthetase.
       0.435
SDL19647.1
Phytoene desaturase.
       0.435
SDL19665.1
Lycopene cyclase domain-containing protein.
       0.435
SDL19690.1
Lycopene cyclase domain-containing protein.
       0.435
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.