STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL22066.1Transcriptional regulator, PaaX family. (282 aa)    
Predicted Functional Partners:
SDL22109.1
Hypothetical protein.
 
     0.874
SDL22082.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.843
SDL22128.1
fatty-acyl-CoA synthase.
 
     0.841
SDL22155.1
Acyl dehydratase.
     
 0.785
SDK87475.1
NAD-dependent deacetylase.
   
    0.588
SDL22042.1
Predicted arabinose efflux permease, MFS family.
       0.540
SDL04171.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
   
 0.499
SDL22024.1
Esterase, PHB depolymerase family.
 
     0.468
SDL52012.1
Hypothetical protein.
 
     0.427
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.