STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL25105.1Iron-regulated ABC transporter membrane component SufB. (477 aa)    
Predicted Functional Partners:
SDL25048.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SDL25028.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.998
SDL25001.1
Nitrogen fixation protein NifU.
 
  
 0.970
SDL25118.1
Transcriptional regulator, ArsR family.
  
    0.966
SDL24980.1
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.925
SDL25084.1
Iron-regulated ABC transporter permease protein SufD.
   
0.925
SDL25064.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.739
SDL47186.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.641
SDL24961.1
Hypothetical protein.
       0.638
SDL25143.1
Cytochrome c oxidase assembly protein subunit 15.
       0.632
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.