STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL31672.1Hypothetical protein. (642 aa)    
Predicted Functional Partners:
SDL31696.1
AAA-like domain-containing protein.
 
     0.959
SDL31635.1
Peptidase family M23.
 
    0.890
SDL31650.1
Hypothetical protein.
       0.827
SDL31711.1
Hypothetical protein.
       0.827
SDK67757.1
DivIVA domain-containing protein.
  
     0.772
SDL68895.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.770
SDL53357.1
FtsK/SpoIIIE family protein.
  
     0.765
SDL32276.1
FtsK/SpoIIIE family protein.
  
     0.762
SDL75918.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.761
SDK65484.1
Hypothetical protein.
  
     0.760
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.