STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL38431.1Heme oxygenase. (643 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.842
SDL73677.1
Leucine-rich repeat (LRR) protein.
     
 0.766
SDL31635.1
Peptidase family M23.
  
     0.750
SDL84809.1
Peptidase family M23; Partial gene; manually curated.
  
     0.741
SDL84929.1
Peptidase family M23; Partial gene; manually curated.
  
     0.741
SDL04171.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 
 0.614
SDL48726.1
Iron (metal) dependent repressor, DtxR family.
      
 0.601
SDK68515.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.554
SDL04005.1
Peroxiredoxin.
      
 0.547
SDL62414.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.544
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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