STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL38657.1ABC-2 type transport system permease protein. (284 aa)    
Predicted Functional Partners:
SDL38645.1
ABC-2 type transport system ATP-binding protein.
    0.953
SDL38674.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
     0.941
SDL38602.1
Simple sugar transport system ATP-binding protein.
       0.492
SDL38619.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
       0.492
SDL38630.1
Simple sugar transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.492
SDL73049.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
  
  0.476
SDL38701.1
Alkaline phosphatase D.
       0.473
SDL58416.1
ABC-2 type transport system permease protein.
  
  
  0.438
SDL74762.1
ABC-2 type transport system permease protein.
  
  
  0.432
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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