STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL39759.1PhoH-like ATPase. (427 aa)    
Predicted Functional Partners:
SDL39744.1
Hypothetical protein.
       0.611
SDL40629.1
Ribonuclease E.
  
    0.556
SDK70713.1
Putative TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.488
SDL39716.1
Hypothetical protein.
       0.472
SDL39784.1
Hypothetical protein.
       0.465
SDK63083.1
PucR C-terminal helix-turn-helix domain-containing protein.
  
     0.463
SDL39799.1
Hypothetical protein.
  
    0.457
SDL39851.1
FtsK/SpoIIIE family protein.
  
    0.457
SDL39872.1
Hypothetical protein.
       0.445
SDL03957.1
Cytochrome c biogenesis protein.
  
     0.422
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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