Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDL23877.1 | SDL51038.1 | SAMN05216298_3214 | SAMN05216298_4157 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 16S rRNA m(2)G 1207 methyltransferase. | 0.440 |
| SDL23877.1 | SDL74509.1 | SAMN05216298_3214 | SAMN05216298_5021 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Phospholipase_D-nuclease N-terminal. | 0.884 |
| SDL23877.1 | nusG | SAMN05216298_3214 | SAMN05216298_4478 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.652 |
| SDL23877.1 | obg | SAMN05216298_3214 | SAMN05216298_0086 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.527 |
| SDL23877.1 | rplA | SAMN05216298_3214 | SAMN05216298_4476 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.888 |
| SDL23877.1 | rpoB | SAMN05216298_3214 | SAMN05216298_4471 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.973 |
| SDL23877.1 | trmD | SAMN05216298_3214 | SAMN05216298_4398 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.470 |
| SDL51038.1 | SDL23877.1 | SAMN05216298_4157 | SAMN05216298_3214 | 16S rRNA m(2)G 1207 methyltransferase. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.440 |
| SDL51038.1 | SDL51058.1 | SAMN05216298_4157 | SAMN05216298_4158 | 16S rRNA m(2)G 1207 methyltransferase. | Hypothetical protein. | 0.495 |
| SDL51038.1 | SDL74509.1 | SAMN05216298_4157 | SAMN05216298_5021 | 16S rRNA m(2)G 1207 methyltransferase. | Phospholipase_D-nuclease N-terminal. | 0.488 |
| SDL51038.1 | SDL79841.1 | SAMN05216298_4157 | SAMN05216298_0071 | 16S rRNA m(2)G 1207 methyltransferase. | PDZ domain-containing protein. | 0.461 |
| SDL51038.1 | bioB | SAMN05216298_4157 | SAMN05216298_0384 | 16S rRNA m(2)G 1207 methyltransferase. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.489 |
| SDL51038.1 | nusG | SAMN05216298_4157 | SAMN05216298_4478 | 16S rRNA m(2)G 1207 methyltransferase. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.441 |
| SDL51038.1 | obg | SAMN05216298_4157 | SAMN05216298_0086 | 16S rRNA m(2)G 1207 methyltransferase. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.747 |
| SDL51038.1 | rplA | SAMN05216298_4157 | SAMN05216298_4476 | 16S rRNA m(2)G 1207 methyltransferase. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.447 |
| SDL51038.1 | rpoB | SAMN05216298_4157 | SAMN05216298_4471 | 16S rRNA m(2)G 1207 methyltransferase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.440 |
| SDL51038.1 | trmD | SAMN05216298_4157 | SAMN05216298_4398 | 16S rRNA m(2)G 1207 methyltransferase. | tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.429 |
| SDL51058.1 | SDL51038.1 | SAMN05216298_4158 | SAMN05216298_4157 | Hypothetical protein. | 16S rRNA m(2)G 1207 methyltransferase. | 0.495 |
| SDL74509.1 | SDL23877.1 | SAMN05216298_5021 | SAMN05216298_3214 | Phospholipase_D-nuclease N-terminal. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.884 |
| SDL74509.1 | SDL51038.1 | SAMN05216298_5021 | SAMN05216298_4157 | Phospholipase_D-nuclease N-terminal. | 16S rRNA m(2)G 1207 methyltransferase. | 0.488 |
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