STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL73843.1Protein of unknown function. (977 aa)    
Predicted Functional Partners:
SDL03915.1
Hypothetical protein.
  
 
   0.837
SDL25247.1
Hypothetical protein.
 
    0.785
SDL25234.1
VWA domain containing CoxE-like protein.
 
     0.779
SDL25267.1
MoxR-like ATPase.
  
    0.766
SDL73866.1
DNA-binding transcriptional regulator, Lrp family.
  
    0.650
SDK88234.1
Hypothetical protein.
  
     0.574
SDL31911.1
Hypothetical protein.
  
     0.542
SDL62355.1
Fibronectin type III domain-containing protein.
  
 
   0.525
SDK57595.1
Subtilisin inhibitor-like.
  
 
   0.495
SDL73886.1
Amino acid exporter, AAE family.
       0.468
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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