STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (390 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.998
SDK68184.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
    
 0.842
SDL03146.1
UDPglucose 6-dehydrogenase.
     
 0.817
SDL76267.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
     
 0.799
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
   
 0.764
SDK89937.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
     
 0.702
SDK58836.1
Xylitol oxidase.
  
  
  0.699
SDL51489.1
Xylitol oxidase.
  
  
  0.699
SDK56870.1
Beta-galactosidase.
     
 0.682
SDK94279.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
     
 0.682
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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