STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE10448.1AraC-type DNA-binding protein. (358 aa)    
Predicted Functional Partners:
SFF18846.1
Glutamate synthase (NADH) large subunit.
    
  0.687
SFE10424.1
Hypothetical protein.
       0.675
SFE10480.1
Transcriptional regulator, TetR family.
 
     0.664
SFE10397.1
Hypothetical protein.
       0.607
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.587
SFE94049.1
Signal transduction histidine kinase.
    
 0.574
SFF94768.1
AraC-type DNA-binding protein.
  
    0.470
SFF58979.1
AraC-type DNA-binding protein.
  
    0.463
Your Current Organism:
Streptomyces alni
NCBI taxonomy Id: 380248
Other names: CGMCC 4.3510, JCM 16122, NRRL B-24611, S. alni, Streptomyces alni Liu et al. 2009, Streptomyces sp. D65, strain D65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.