STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE88221.1ABC transporter. (539 aa)    
Predicted Functional Partners:
SFE88250.1
Peptidyl-tRNA hydrolase.
 
     0.842
SFE24072.1
Lipoprotein-releasing system ATP-binding protein.
  
     0.747
SFF61260.1
Putative ABC transport system ATP-binding protein.
  
     0.744
SFF66320.1
ATP-binding cassette, subfamily B.
  
     0.620
SFE88043.1
Hypothetical protein.
       0.610
SFF49186.1
ABC-type lipoprotein export system, ATPase component.
  
     0.568
SFE60131.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the ABC transporter superfamily.
  
     0.563
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.553
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.545
SFF73318.1
ABC-2 type transport system ATP-binding protein.
 
     0.487
Your Current Organism:
Streptomyces alni
NCBI taxonomy Id: 380248
Other names: CGMCC 4.3510, JCM 16122, NRRL B-24611, S. alni, Streptomyces alni Liu et al. 2009, Streptomyces sp. D65, strain D65
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