STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF24719.1methionyl-tRNA formyltransferase. (309 aa)    
Predicted Functional Partners:
SDG32416.1
Methenyltetrahydrofolate cyclohydrolase.
  
  
 0.910
SDG32433.1
Serine hydroxymethyltransferase.
 
 
 0.900
SDG10224.1
IMP cyclohydrolase.
  
  
 0.857
SDG32117.1
5,10-methylenetetrahydrofolate reductase.
    
 0.851
SDG32455.1
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase.
 
  
0.844
SDG04416.1
HD domain-containing protein.
  
  
  0.839
SDG09839.1
methionyl-tRNA synthetase.
 
  
  0.808
SDF24688.1
N-acetylglucosaminyl deacetylase, LmbE family.
     
 0.795
SDF52210.1
Malate dehydrogenase (NAD).
    
  0.778
SDG02985.1
Dihydropteroate synthase-related protein.
    
  0.778
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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