STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF27283.1SSU ribosomal protein S27AE. (49 aa)    
Predicted Functional Partners:
SDF27320.1
SSU ribosomal protein S24E.
 
 
 0.986
SDF27380.1
DNA-directed RNA polymerase, subunit E''.
 
    0.955
SDF71025.1
LSU ribosomal protein L40E.
 
   0.953
SDF65364.1
LSU ribosomal protein L29P.
   
 
 0.925
SDF21686.1
LSU ribosomal protein L31E.
  
 
 0.903
SDF73158.1
SSU ribosomal protein S17E.
  
   0.888
SDF27422.1
DNA-directed RNA polymerase, subunit E'.
 
  
 0.885
SDF97079.1
SSU ribosomal protein S6E.
 
 
 0.885
SDF68572.1
SSU ribosomal protein S27E.
  
   0.883
SDF80837.1
LSU ribosomal protein L37E; Manually curated.
   
   0.883
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.