STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF31010.1CRISPR-associated protein, Cse3 family. (203 aa)    
Predicted Functional Partners:
SDF31039.1
CRISPR-associated protein, Cas5e family.
 
     0.950
SDF31070.1
CRISPR-associated protein, Cse4 family.
 
     0.943
SDF30984.1
CRISPR-associated protein, Cas1 family.
 
     0.934
SDF30956.1
CRISPR-associated protein, Cas2 family.
 
     0.933
SDF31184.1
CRISPR-associated helicase, Cas3 family.
 
     0.920
SDF31151.1
CRISPR-associated protein, Cse1 family.
 
     0.908
SDF31128.1
CRISPR-associated protein, Cse2 family.
       0.741
SDF30931.1
Hypothetical protein.
       0.687
SDF31220.1
CRISPR-associated protein Csa3.
       0.432
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.