STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF31889.1snoRNP protein GAR1. (101 aa)    
Predicted Functional Partners:
SDF64584.1
tRNA pseudouridine synthase B.
   
 0.999
SDF68649.1
H/ACA ribonucleoprotein complex subunit 3; Manually curated.
   
 0.999
SDF97228.1
LSU ribosomal protein L7AE.
  
 0.985
SDF44440.1
rRNA biogenesis protein Nop56/Nop58.
  
 0.983
SDF88808.1
Hypothetical protein.
   
 0.910
SDF82999.1
Ribonuclease P protein subunit Rpp30.
   
 
 0.861
SDF86037.1
tRNA pseudouridine13 synthase.
   
 0.851
SDF64809.1
LSU ribosomal protein L30P.
   
 0.805
SDF82697.1
U3 small nucleolar ribonucleoprotein protein IMP4; Manually curated.
   
 
  0.763
SDF64441.1
SSU ribosomal protein S4P.
   
  0.749
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.