STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF43963.1L-lysine 2,3-aminomutase. (478 aa)    
Predicted Functional Partners:
SDF43995.1
Putative beta-lysine N-acetyltransferase.
  
 0.980
SDG01939.1
Dipeptidase D.
  
 
 0.844
SDF92966.1
Pyrrolysine biosynthesis protein PylB.
    
 0.810
SDF91952.1
Diaminopimelate decarboxylase.
     
 0.784
SDF29403.1
MCP methyltransferase, CheR-type.
    
   0.759
SDF86316.1
Chemotaxis protein methyltransferase CheR.
    
   0.759
SDF53021.1
Aspartate kinase.
    
 0.624
SDG24404.1
Biotin synthase.
 
  
 0.567
SDF43929.1
Hypothetical protein.
       0.534
SDG04663.1
Biotin synthase.
    
 0.510
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.