STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF50020.1tryptophanyl-tRNA synthetase. (432 aa)    
Predicted Functional Partners:
SDF83415.1
valyl-tRNA synthetase.
 
  
 0.969
SDF49986.1
phenylalanyl-tRNA synthetase, alpha subunit.
  
  
 0.796
SDF82324.1
Methanogenesis imperfect marker protein 11.
  
    0.791
SDF96803.1
DNA helicase-4.
     
 0.769
SDF67205.1
leucyl-tRNA synthetase.
 
 
 0.757
SDG09041.1
arginyl-tRNA synthetase.
 
  
 0.754
SDF84688.1
seryl-tRNA synthetase.
  
 
 0.748
SDF56939.1
alanyl-tRNA synthetase.
 
 
 0.746
SDF33685.1
DNA topoisomerase I.
 
  
 0.743
SDG02626.1
phenylalanyl-tRNA synthetase beta subunit.
 
  
 0.733
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.