STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF52358.1Repressor of nif and glnA expression. (251 aa)    
Predicted Functional Partners:
SDF52286.1
Excinuclease ABC subunit C.
       0.666
SDF52328.1
Glucose-6-phosphate isomerase.
 
     0.656
SDF49550.1
Hypothetical protein.
  
     0.604
SDF53335.1
Tetrahydromethanopterin S-methyltransferase, subunit C.
  
     0.552
SDF53300.1
Tetrahydromethanopterin S-methyltransferase, subunit B.
  
     0.545
SDF34228.1
Methanogenesis marker radical SAM protein.
  
     0.533
SDF53418.1
Tetrahydromethanopterin S-methyltransferase, subunit E.
  
     0.531
SDF53379.1
Tetrahydromethanopterin S-methyltransferase, subunit D.
  
     0.523
SDF53193.1
Tetrahydromethanopterin S-methyltransferase, subunit G.
  
     0.517
SDF53259.1
Tetrahydromethanopterin S-methyltransferase, subunit A.
  
     0.512
Your Current Organism:
Methanolobus vulcani
NCBI taxonomy Id: 38026
Other names: DSM 3029, M. vulcani, OCM 157, strain PL-12/M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.